USC-OGP 2-DE database Two-dimensional polyacrylamide gel electrophoresis database

USC-OGP 2-DE database  Search by                Maps             Select Remote Interfaces [All Interfaces] SWISS-2DPAGE World-2DPAGE Portal World-2DPAGE Repository Exclude local DBs has only effect if a remote interface is selected

Searching in 'USC-OGP 2-DE database' for entry matching: H2B1C_HUMAN USC-OGP 2-DE database:  H2B1C_HUMAN H2B1C_HUMAN General information about the entry View entry in simple text format Entry name H2B1C_HUMAN Primary accession number P02278 integrated into USC-OGP 2-DE database on  January 17, 2017 (release 1) 2D Annotations were last modified on January 17, 2017 (version 1) General Annotations were last modified on  April 5, 2017 (version 2) Name and origin of the protein Description RecName: Full=Histone H2B type 1-C/E/F/G/I; AltName: Full=Histone H2B.1 A; AltName: Full=Histone H2B.a; Short=H2B/a; AltName: Full=Histone H2B.g; Short=H2B/g; AltName: Full=Histone H2B.h; Short=H2B/h; AltName: Full=Histone H2B.k; Short=H2B/k; AltName: Full=Histone H2B.l; Short=H2B/l;. Gene name Name=HIST1H2BC Synonyms=H2BFL    and Name=HIST1H2BE Synonyms=H2BFH    and Name=HIST1H2BF Synonyms=H2BFG    and Name=HIST1H2BG Synonyms=H2BFA    and Name=HIST1H2BI Synonyms=H2BFK Annotated species Homo sapiens (Human) [TaxID: 9606] Taxonomy Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. References [1]   2D GEL CHARACTERIZATION Author 1., Author 2. Submitted (Mar-2011) to Current 2D PAGE maps for identified proteins How to interpret a protein UVEAL_MELANOMA_3-10 {UVEAL MELANOMA 3-10} Homo sapiens (Human)   map experimental info   UVEAL_MELANOMA_3-10 MAP LOCATIONS: SPOT OGP-1329: pI=4.39; Mw=16914 SPOT OGP-1331: pI=5.13; Mw=16684 Cross-references UniProtKB/Swiss-Prot P62807; H2B1C_HUMAN. 2D PAGE maps for identified proteins How to interpret a protein map You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw. Warning 1: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly. Warning 2: the 2D PAGE map is built on demand. This may take some few seconds to be computed. External data extracted from UniProtKB/Swiss-Prot Extracted from UniProtKB/Swiss-Prot, release: 0.0 Entry name H2B1C_HUMAN Primary accession number P62807 Secondary accession number(s) P02278 Q3B872 Q4VB69 Q93078 Q93080 Sequence was last modified on  March 2, 2010 (version 4) Annotations were last modified on  March 15, 2017 (version 148) Name and origin of the protein Description RecName: Full=Histone H2B type 1-C/E/F/G/I; AltName: Full=Histone H2B.1 A; AltName: Full=Histone H2B.a; Short=H2B/a; AltName: Full=Histone H2B.g; Short=H2B/g; AltName: Full=Histone H2B.h; Short=H2B/h; AltName: Full=Histone H2B.k; Short=H2B/k; AltName: Full=Histone H2B.l; Short=H2B/l; Gene name Name=HIST1H2BC Synonyms=H2BFL    and Name=HIST1H2BE Synonyms=H2BFH    and Name=HIST1H2BF Synonyms=H2BFG    and Name=HIST1H2BG Synonyms=H2BFA    and Name=HIST1H2BI Synonyms=H2BFK Encoded on Name=HIST1H2BC; Synonyms=H2BFL; and Name=HIST1H2BE; Synonyms=H2BFH; and Name=HIST1H2BF; Synonyms=H2BFG; and Name=HIST1H2BG; Synonyms=H2BFA; and Name=HIST1H2BI; Synonyms=H2BFK Keywords 3D-structure; Acetylation; Antibiotic; Antimicrobial; Chromosome; Complete proteome; Direct protein sequencing; DNA-binding; Glycoprotein; Isopeptide bond; Methylation; Nucleosome core; Nucleus; Phosphoprotein; Polymorphism; Reference proteome; Ubl conjugation. Copyright Copyrighted by the UniProt Consortium, see http://www.uniprot.org/help/license. Distributed under the Creative Commons Attribution-NoDerivs License Cross-references EMBL M60750; AAA63189.1; -; Genomic_DNA EMBL Z80782; CAB02544.1; -; Genomic_DNA EMBL Z80779; CAB02541.1; -; Genomic_DNA EMBL Z80780; CAB02542.1; -; Genomic_DNA EMBL Z80783; CAB02545.1; -; Genomic_DNA EMBL AF531286; AAN06686.1; -; Genomic_DNA EMBL AF531288; AAN06688.1; -; Genomic_DNA EMBL AF531289; AAN06689.1; -; Genomic_DNA EMBL AF531290; AAN06690.1; -; Genomic_DNA EMBL AF531292; AAN06692.1; -; Genomic_DNA EMBL AL031777; CAC03411.1; -; Genomic_DNA EMBL AL031777; CAC03417.1; -; Genomic_DNA EMBL AL031777; CAC03420.1; -; Genomic_DNA EMBL AL353759; CAC04130.1; -; Genomic_DNA EMBL BC001131; -; NOT_ANNOTATED_CDS; mRNA EMBL BC009612; -; NOT_ANNOTATED_CDS; mRNA EMBL BC096120; AAH96120.1; -; mRNA EMBL BC096122; AAH96122.1; -; mRNA EMBL BC096123; AAH96123.1; -; mRNA EMBL BC101653; AAI01654.1; -; mRNA EMBL BC101655; AAI01656.1; -; mRNA EMBL BC101748; AAI01749.1; -; mRNA EMBL BC101750; AAI01751.1; -; mRNA EMBL BC106899; AAI06900.1; -; mRNA CCDS CCDS4584.1; -; . CCDS CCDS4588.1; -; . CCDS CCDS4592.1; -; . CCDS CCDS4594.1; -; . CCDS CCDS4603.1; -; . PIR E40335; HSHUB2; . PIR S65409; S65409; . RefSeq NP_003509.1; NM_003518.3; . RefSeq NP_003513.1; NM_003522.3; . RefSeq NP_003514.2; NM_003523.2; . RefSeq NP_003516.1; NM_003525.2; . RefSeq NP_003517.2; NM_003526.2; . RefSeq NP_066407.1; NM_021063.3; . UniGene Hs.182137; -; . UniGene Hs.534369; -; . UniGene Hs.553506; -; . UniGene Hs.591797; -; . UniGene Hs.591809; -; . UniGene Hs.658713; -; . UniGene Hs.726509; -; . PDB 5KGF; EM; 4.54 A; D/H=1-126 PDBsum 5KGF; -; . ProteinModelPortal P62807; -; . SMR P62807; -; . BioGrid 109270; 17; . BioGrid 113935; 219; . BioGrid 113939; 4; . BioGrid 113940; 7; . BioGrid 113942; 4; . BioGrid 113943; 22; . DIP DIP-32890N; -; . IntAct P62807; 27; . MINT MINT-276222; -; . STRING 9606.ENSP00000366962; -; . iPTMnet P62807; -; . PhosphoSitePlus P62807; -; . SwissPalm P62807; -; . BioMuta HIST1H2BC; -; . DMDM 290457686; -; . EPD P62807; -; . MaxQB P62807; -; . PaxDb P62807; -; . PeptideAtlas P62807; -; . PRIDE P62807; -; . TopDownProteomics P62807; -; . DNASU 8339; -; . DNASU 8344; -; . DNASU 8347; -; . Ensembl ENST00000314332; ENSP00000321744; ENSG00000180596; . Ensembl ENST00000356530; ENSP00000348924; ENSG00000277224; . Ensembl ENST00000377733; ENSP00000366962; ENSG00000278588; . Ensembl ENST00000396984; ENSP00000380180; ENSG00000180596; . Ensembl ENST00000541790; ENSP00000445633; ENSG00000273802; . Ensembl ENST00000614097; ENSP00000483237; ENSG00000274290; . Ensembl ENST00000634910; ENSP00000489317; ENSG00000274290; . GeneID 3017; -; . GeneID 8339; -; . GeneID 8343; -; . GeneID 8344; -; . GeneID 8346; -; . GeneID 8347; -; . KEGG hsa:3017; -; . KEGG hsa:8339; -; . KEGG hsa:8343; -; . KEGG hsa:8344; -; . KEGG hsa:8346; -; . KEGG hsa:8347; -; . UCSC uc003ngk.5; human; . CTD 3017; -; . CTD 8339; -; . CTD 8343; -; . CTD 8344; -; . CTD 8346; -; . CTD 8347; -; . DisGeNET 3017; -; . DisGeNET 8339; -; . DisGeNET 8343; -; . DisGeNET 8344; -; . DisGeNET 8346; -; . DisGeNET 8347; -; . GeneCards HIST1H2BC; -; . GeneCards HIST1H2BE; -; . GeneCards HIST1H2BF; -; . GeneCards HIST1H2BG; -; . GeneCards HIST1H2BI; -; . HGNC HGNC:4757; HIST1H2BC; . HGNC HGNC:4753; HIST1H2BE; . HGNC HGNC:4752; HIST1H2BF; . HGNC HGNC:4746; HIST1H2BG; . HGNC HGNC:4756; HIST1H2BI; . HPA HPA042205; -; . HPA HPA043013; -; . HPA HPA048671; -; . MIM 602798; gene; . MIM 602804; gene; . MIM 602805; gene; . MIM 602807; gene; . MIM 602847; gene; . neXtProt NX_P62807; -; . OpenTargets ENSG00000180596; -; . OpenTargets ENSG00000273802; -; . OpenTargets ENSG00000274290; -; . OpenTargets ENSG00000277224; -; . OpenTargets ENSG00000278588; -; . PharmGKB PA29132; -; . eggNOG KOG1744; Eukaryota; . eggNOG ENOG4111NV5; LUCA; . GeneTree ENSGT00760000118976; -; . HOGENOM HOG000231213; -; . HOVERGEN HBG007774; -; . InParanoid P62807; -; . KO K11252; -; . OMA KATHAFN; -; . OrthoDB EOG091G0XGD; -; . PhylomeDB P62807; -; . TreeFam TF300212; -; . Reactome R-HSA-1221632; Meiotic synapsis; . Reactome R-HSA-171306; Packaging Of Telomere Ends; . Reactome R-HSA-201722; Formation of the beta-catenin:TCF transactivating complex; . Reactome R-HSA-212300; PRC2 methylates histones and DNA; . Reactome R-HSA-2299718; Condensation of Prophase Chromosomes; . Reactome R-HSA-2559580; Oxidative Stress Induced Senescence; . Reactome R-HSA-2559582; Senescence-Associated Secretory Phenotype (SASP); . Reactome R-HSA-2559586; DNA Damage/Telomere Stress Induced Senescence; . Reactome R-HSA-3214815; HDACs deacetylate histones; . Reactome R-HSA-3214847; HATs acetylate histones; . Reactome R-HSA-427359; SIRT1 negatively regulates rRNA Expression; . Reactome R-HSA-427389; ERCC6 (CSB) and EHMT2 (G9a) positively regulate rRNA expression; . Reactome R-HSA-427413; NoRC negatively regulates rRNA expression; . Reactome R-HSA-5250924; B-WICH complex positively regulates rRNA expression; . Reactome R-HSA-5334118; DNA methylation; . Reactome R-HSA-5578749; Transcriptional regulation by small RNAs; . Reactome R-HSA-5617472; Activation of anterior HOX genes in hindbrain development during early embryogenesis; . Reactome R-HSA-5625886; Activated PKN1 stimulates transcription of AR (androgen receptor) regulated genes KLK2 and KLK3; . Reactome R-HSA-5689880; Ub-specific processing proteases; . Reactome R-HSA-5693565; Recruitment and ATM-mediated phosphorylation of repair and signaling proteins at DNA double strand breaks; . Reactome R-HSA-5693571; Nonhomologous End-Joining (NHEJ); . Reactome R-HSA-5693607; Processing of DNA double-strand break ends; . Reactome R-HSA-606279; Deposition of new CENPA-containing nucleosomes at the centromere; . Reactome R-HSA-69473; G2/M DNA damage checkpoint; . Reactome R-HSA-73728; RNA Polymerase I Promoter Opening; . Reactome R-HSA-73777; RNA Polymerase I Chain Elongation; . Reactome R-HSA-8866654; E3 ubiquitin ligases ubiquitinate target proteins; . Reactome R-HSA-912446; Meiotic recombination; . Reactome R-HSA-977225; Amyloid fiber formation; . ChiTaRS HIST1H2BC; human; . ChiTaRS HIST1H2BE; human; . ChiTaRS HIST1H2BG; human; . GeneWiki HIST1H2BE; -; . GeneWiki HIST1H2BF; -; . GeneWiki HIST1H2BG; -; . GeneWiki HIST1H2BI; -; . GeneWiki Histone_H2B_type_1-C; -; . Proteomes UP000005640; Chromosome 6; . Bgee ENSG00000168242; -; . CleanEx HS_HIST1H2BC; -; . CleanEx HS_HIST1H2BE; -; . CleanEx HS_HIST1H2BF; -; . CleanEx HS_HIST1H2BG; -; . CleanEx HS_HIST1H2BI; -; . ExpressionAtlas P62807; baseline and differential; . Genevisible P62807; HS; . GO GO:0005829; C:cytosol; IDA:HPA; . GO GO:0070062; C:extracellular exosome; IDA:UniProtKB; . GO GO:0005615; C:extracellular space; IDA:UniProtKB; . GO GO:0005654; C:nucleoplasm; IDA:HPA; . GO GO:0000786; C:nucleosome; NAS:UniProtKB; . GO GO:0005634; C:nucleus; IDA:UniProtKB; . GO GO:0003677; F:DNA binding; NAS:UniProtKB; . GO GO:0019731; P:antibacterial humoral response; IDA:UniProtKB; . GO GO:0050830; P:defense response to Gram-positive bacterium; IDA:UniProtKB; . GO GO:0002227; P:innate immune response in mucosa; IDA:UniProtKB; . GO GO:0006334; P:nucleosome assembly; NAS:UniProtKB; . GO GO:0016567; P:protein ubiquitination; TAS:Reactome; . Gene3D 1.10.20.10; -; 1; . InterPro IPR009072; Histone-fold; . InterPro IPR007125; Histone_H2A/H2B/H3; . InterPro IPR000558; Histone_H2B; . PANTHER PTHR23428; PTHR23428; 1; . Pfam PF00125; Histone; 1; . PRINTS PR00621; HISTONEH2B; . SMART SM00427; H2B; 1; . SUPFAM SSF47113; SSF47113; 1; . PROSITE PS00357; HISTONE_H2B; 1; .

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